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ATAN11 ATAN11 RING RING AT4G08790 AT4G08790 PGGT-I PGGT-I SURF1 SURF1 AT1G12300 AT1G12300 AT3G48810 AT3G48810 EMB1586 EMB1586 AT1G48510 AT1G48510 AT2G21130 AT2G21130 AT1G13030 AT1G13030
"AT1G12300" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G12300Pentatricopeptide repeat-containing protein (637 aa)    
Predicted Functional Partners:
EMB1586
Embryo defective 1586; Essential protein required during embryogenesis. Required for mitochondrial metabolism. Necessary for normal plasmodesmata (PD) development and aperture regulation (551 aa)
     
   
  0.684
ATAN11
ANTHOCYANIN11; Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing. Required for the expression of APRR9, APRR7, and APRR5. Regulated by APRR9 and APRR7 at the transcriptional level, indicating the existence of a positive feedback loop within the circadian clock (PubMed-21357491). May function to delay the expression of the morning genes until dawn approaches (346 aa)
           
  0.670
AT1G13030
Coilin; Probable component of nuclear coiled bodies, also known as Cajal bodies or CBs, which are involved in the modification and assembly of nucleoplasmic snRNPs (Probable). Required for CBs formation (PubMed-16624863). Binds snRNAs and non-specific artificial RNA via the N-terminal part of the NOD domain and via the NLS2 region (212-282) of the IDD domain (PubMed-23320094). The two sites are able to function independently and provide effective RNA-binding in a non-cooperative manner (PubMed-23320094) (608 aa)
           
  0.649
PGGT-I
Geranylgeranyl transferase type-1 subunit beta; Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X (CaaX). Seems to exclusively prenylate CaaX substrates with leucine in the terminal position. The beta subunit is responsible for peptide-binding. May negatively regulate abscisic acid (ABA) signaling in guard cells and auxin- induced lateral root initiation (375 aa)
           
  0.636
AT2G21130
Peptidyl-prolyl cis-trans isomerase CYP19-2; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (174 aa)
           
  0.601
RING
SBP (S-ribonuclease binding protein) family protein; E3 ubiquitin-protein ligase involved in the regulation of pathogen and abiotic stress responses by facilitating degradation of MYB108/BOI. Attenuates cell death by preventing caspase activation. Has no effect on the stability of the DELLA proteins. Not regulated by MYB108/BOI (304 aa)
           
  0.557
SURF1
SURFEIT 1; Probably involved in the biogenesis of the COX complex (354 aa)
     
   
  0.449
AT1G48510
Surfeit locus 1 cytochrome c oxidase biogenesis protein; May be involved in the biogenesis of the COX complex (384 aa)
     
   
  0.449
AT3G48810
Pentatricopeptide repeat-containing protein (659 aa)
     
     
0.438
AT4G08790
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (307 aa)
     
        0.437
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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