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CSD3 CSD3 PFA-DSP5 PFA-DSP5 RCI1A RCI1A AT1G53190 AT1G53190 AT1G13030 AT1G13030 AT3G27200 AT3G27200 SDG40 SDG40 AT1G12775 AT1G12775 PRMT7 PRMT7 EMB1586 EMB1586 EMB25 EMB25
"AT1G12775" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G12775Pentatricopeptide repeat-containing protein (644 aa)    
Predicted Functional Partners:
AT1G53190
RING/U-box superfamily protein (494 aa)
           
  0.861
PFA-DSP5
Tyrosine specific protein phosphatase family protein (204 aa)
           
  0.771
PRMT7
Protein arginine methyltransferase 7; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA) (724 aa)
     
   
  0.756
EMB1586
Embryo defective 1586; Essential protein required during embryogenesis. Required for mitochondrial metabolism. Necessary for normal plasmodesmata (PD) development and aperture regulation (551 aa)
     
   
  0.744
AT3G27200
Cupredoxin superfamily protein (174 aa)
           
  0.740
SDG40
SET domain group 40 (491 aa)
     
   
  0.681
RCI1A
General regulatory factor 3; Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes (PubMed-7972511, PubMed-7870824, PubMed-16407442). Involved in the regulation of nutrient metabolism (PubMed-22104211, PubMed-21094157). Reciprocal negative transcription regulation of miR396 (PubMed-22751317). Negative regulator of constitutive freezing tolerance and cold acclimation by controlling cold-induced gene expression partially through an ethylene (ET)-dependent pathway; prevents ethylene (ET) biosynthesis, [...] (255 aa)
           
  0.555
EMB25
EMBRYO DEFECTIVE 25; RNA helicase involved in group II intron splicing (PubMed-26147377). Essential protein required during embryogenesis. Involved in post-transcriptional gene silencing. Modulates the determination of cell fate. Necessary for normal plasmodesmata (PD) development and aperture regulation (1171 aa)
     
   
  0.500
AT1G13030
Coilin; Probable component of nuclear coiled bodies, also known as Cajal bodies or CBs, which are involved in the modification and assembly of nucleoplasmic snRNPs (Probable). Required for CBs formation (PubMed-16624863). Binds snRNAs and non-specific artificial RNA via the N-terminal part of the NOD domain and via the NLS2 region (212-282) of the IDD domain (PubMed-23320094). The two sites are able to function independently and provide effective RNA-binding in a non-cooperative manner (PubMed-23320094) (608 aa)
     
   
  0.483
CSD3
Copper/zinc superoxide dismutase 3; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (164 aa)
           
  0.450
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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