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AT5G09880 AT5G09880 EMB2770 EMB2770 AT1G24160 AT1G24160 AT1G13350 AT1G13350 AT4G38780 AT4G38780 AT3G12915 AT3G12915 AT5G17460 AT5G17460 AT1G15940 AT1G15940 LOS1 LOS1 At1g80070 At1g80070 AT1G42440 AT1G42440
"AT1G13350" - Protein kinase superfamily protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G13350Protein kinase superfamily protein (788 aa)    
Predicted Functional Partners:
AT4G38780
Pre-mRNA-processing-splicing factor (2332 aa)
     
 
  0.936
At1g80070
ABNORMAL SUSPENSOR 2 (2359 aa)
     
 
  0.936
AT3G12915
Ribosomal protein S5/Elongation factor G/III/V family protein (820 aa)
     
      0.918
LOS1
Elongation factor EF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity). Involved in cold responses leading to freezing tolerance via the induction of cold-responsive genes (PubMed-9401 [...] (843 aa)
     
      0.918
AT1G24160
Uncharacterized protein (540 aa)
     
   
  0.707
AT5G09880
RNA-binding protein 39 (527 aa)
     
   
  0.707
EMB2770
EMBRYO DEFECTIVE 2770; Pre-mRNA splicing factor required for splicing and for the turnover of unstable transcripts. May be a U5 snRNP-associated protein involved in the formation of U4/U6-U5 tri-snRNP. Involved in responses to abiotic stresses. Involved in microRNAs (miRNAs) biogenesis by functioning in primary miRNAs (pri-miRNAs) splicing. Required for DNA methylation and transcriptional silencing through the RNA-directed DNA methylation (RdDM) pathway (1029 aa)
     
 
  0.692
AT1G42440
Uncharacterized protein (793 aa)
     
   
  0.683
AT1G15940
Tudor/PWWP/MBT superfamily protein (990 aa)
     
   
  0.680
AT5G17460
Uncharacterized protein (329 aa)
           
  0.670
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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