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AT1G45332 AT1G45332 MEE5 MEE5 AT5G25230 AT5G25230 AT2G45030 AT2G45030 AT4G38780 AT4G38780 AT1G13360 AT1G13360 At1g80070 At1g80070 AT3G12915 AT3G12915 AT3G22980 AT3G22980 LOS1 LOS1 SCO1 SCO1
"AT1G13360" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G13360Uncharacterized protein (194 aa)    
Predicted Functional Partners:
AT4G38780
Pre-mRNA-processing-splicing factor (2332 aa)
     
 
  0.936
At1g80070
ABNORMAL SUSPENSOR 2 (2359 aa)
     
 
  0.936
AT3G12915
Ribosomal protein S5/Elongation factor G/III/V family protein (820 aa)
     
      0.918
LOS1
Elongation factor EF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity). Involved in cold responses leading to freezing tolerance via the induction of cold-responsive genes (PubMed-9401 [...] (843 aa)
     
      0.918
AT5G25230
Elongation factor EF-2 (973 aa)
     
      0.667
MEE5
MATERNAL EFFECT EMBRYO ARREST 5 (987 aa)
     
      0.667
AT3G22980
Elongation factor EF-2 (1015 aa)
       
      0.666
AT2G45030
Elongation factor EF-G; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A- site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (754 aa)
       
      0.666
SCO1
SNOWY COTYLEDON 1; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A- site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Required for the eoplasts redifferentiation i [...] (783 aa)
       
      0.666
AT1G45332
Elongation factor G; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A- site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (754 aa)
       
      0.666
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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