Groups of genes that are frequently observed in each other's genomic neighborhood.
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Homeobox protein 31; Putative transcription factor. Probably involved in the regulation of floral induction (312 aa)
Predicted Functional Partners:
Homeobox protein 21; Putative transcription factor (310 aa)
FANTASTIC FOUR 2; Regulates the size of the shoot meristem by modulating the CLV3-WUS feedback loop. Can repress WUS but is under negative control by CLV3 (240 aa)
Homeobox protein 25; Putative transcription factor (279 aa)
Homeobox protein 33; Putative transcription factor. Binds DNA at 5’-ATTA-3’ consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner (309 aa)
FLOR1 (325 aa)
Homeobox protein 30; Putative transcription factor (271 aa)
Uncharacterized protein (347 aa)
Per1-like family protein (345 aa)
Homeobox protein 28; Putative transcription factor (249 aa)
Homeobox protein 23; Putative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway (334 aa)
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NCBI taxonomy Id: 3702 Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress