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AFH14 AFH14 WYR WYR JASON JASON AT1G14770 AT1G14770 AtCDC48C AtCDC48C AT5G27120 AT5G27120 AT3G26850 AT3G26850 IMPA-5 IMPA-5 SPT16 SPT16 CPSF100 CPSF100 NRPE3B NRPE3B
"AT1G14770" - RING/FYVE/PHD zinc finger protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G14770RING/FYVE/PHD zinc finger protein (429 aa)    
Predicted Functional Partners:
IMPA-5
Importin alpha isoform 5; Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope (519 aa)
           
  0.866
AT5G27120
Putative nucleolar protein 5-1; Required for 60S ribosomal subunit biogenesis (533 aa)
           
  0.866
NRPE3B
DNA-directed RNA polymerase II subunit RPB3-B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerases IV and V which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA- directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements (319 aa)
     
   
  0.776
WYR
WYRD (1826 aa)
     
   
  0.655
AFH14
Formin Homology 14 (1230 aa)
     
   
  0.652
JASON
JASON; Required for normal spindle orientation at male meiosis II and normal formation of tetrad of microspores. Acts as positive regulator of PS1 in male sporogenesis. Not involved in female meiosis (481 aa)
     
   
  0.628
SPT16
FACT complex subunit SPT16; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (1074 aa)
     
   
  0.619
AT3G26850
Histone-lysine N-methyltransferase (265 aa)
     
   
  0.591
AtCDC48C
Cell division cycle 48C; Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity) (810 aa)
           
  0.551
CPSF100
Cleavage and polyadenylation specificity factor 100; CPSF plays a key role in pre-mRNA 3’-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition (By similarity). Required for antisense-RNA- mediated gene silencing (PubMed-17008405) (739 aa)
     
   
  0.520
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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