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AT5G62260 AT5G62260 AHL1 AHL1 AT1G63470 AT1G63470 AHL20 AHL20 AT1G14910 AT1G14910 HMGA HMGA AT5G48385 AT5G48385 AGF2 AGF2 AT2G22440 AT2G22440 AT5G27230 AT5G27230 SOB3 SOB3
"HMGA" - High mobility group A in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
HMGAHigh mobility group A; Binds A/T-rich DNA with a highly dynamic distribution into the nucleus (204 aa)    
Predicted Functional Partners:
AT1G14910
ENTH/ANTH/VHS superfamily protein (692 aa)
           
  0.958
AT2G22440
Uncharacterized protein (256 aa)
           
  0.868
AT5G48385
FRIGIDA-like protein (558 aa)
           
  0.865
AT5G27230
Frigida-like protein (948 aa)
           
  0.862
AHL1
AT-hook motif nuclear-localized protein 1; Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). May play a function in the positioning of chromatin fibers within the nucleus (356 aa)
           
  0.841
AGF2
AT-hook protein of GA feedback 2; Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity). Binds the DNA sequence GNFEI (GA-negative feedback element I) in the GA3OX1 promoter (PubMed-17277098). Negatively regulates plant innate immunity (PTI) to pathogens through the down-regulation of the PAMP-triggered FRK1 expression (PubMed-20738724) (310 aa)
     
   
  0.827
AHL20
AT-hook motif nuclear-localized protein 20; Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity). Negatively regulates plant innate immunity (PTI) to pathogens through the down-regulation of the PAMP-triggered NHO1 and FRK1 expression (PubMed-20738724) (281 aa)
           
  0.817
SOB3
SUPPRESSOR OF PHYB-4#3; Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity). Acts redundantly with AHL18, AHL22 and AHL27 in the regulation of flowering and regulation of the hypocotyl elongation (PubMed-19517252). Acts redundantly with AHL27/ESC to modulate hypocotyl growth inhibition in response to light (PubMed-18088311) (302 aa)
           
  0.736
AT5G62260
AT hook motif DNA-binding protein; Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (404 aa)
           
  0.705
AT1G63470
AT hook motif DNA-binding family protein; Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (378 aa)
           
  0.675
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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