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AT4G31210 AT4G31210 MAP1C MAP1C emb2726 emb2726 PDF1A PDF1A MAP1D MAP1D AT1G27400 AT1G27400 AT5G09770 AT5G09770 AT1G67430 AT1G67430 AT5G64650 AT5G64650 AT3G54210 AT3G54210 MAP1B MAP1B
"PDF1A" - Peptide deformylase 1A in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDF1APeptide deformylase 1A; Removes the formyl group from the N-terminal Met of newly synthesized proteins (269 aa)    
Predicted Functional Partners:
MAP1B
Methionine aminopeptidase 1C; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (344 aa)
   
   
  0.822
MAP1D
Methionine aminopeptidase 1D; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (350 aa)
   
   
  0.802
MAP1C
Methionine aminopeptidase 1B; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (369 aa)
   
   
  0.787
AT5G09770
Ribosomal protein L17 family protein (160 aa)
     
 
  0.769
AT3G54210
50S ribosomal protein L17; This protein binds directly to 23S ribosomal RNA (211 aa)
     
 
  0.768
AT1G27400
60S ribosomal protein L17-1 (176 aa)
     
      0.753
AT5G64650
Large subunit ribosomal protein L17 (160 aa)
     
 
  0.749
AT4G31210
DNA topoisomerase, type IA, core (1284 aa)
   
   
  0.714
AT1G67430
60S ribosomal protein L17-2 (175 aa)
     
      0.711
emb2726
Embryo defective 2726; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (953 aa)
   
   
  0.705
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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