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AT2G21520 AT2G21520 AT4G39170 AT4G39170 PIT1 PIT1 OCT6 OCT6 EDA32 EDA32 RABG3c RABG3c GABP GABP NRPC2 NRPC2 NRPC1 NRPC1 AT3G54470 AT3G54470 ABCG31 ABCG31
"OCT6" - Organic cation/carnitine transporter 6 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
OCT6Organic cation/carnitine transporter 6; High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations (By similarity) (521 aa)    
Predicted Functional Partners:
AT2G21520
Sec.4-like phosphatidylinositol transfer protein; Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro (By similarity) (637 aa)
       
 
  0.927
EDA32
Embryo sac development arrest 32 (279 aa)
           
  0.850
ABCG31
ATP-binding cassette G31; May be a general defense protein (1426 aa)
   
 
  0.796
AT4G39170
Sec14p-like phosphatidylinositol transfer family protein; Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro (By similarity) (614 aa)
       
 
  0.755
NRPC1
Nuclear RNA polymerase C1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Forms the polymerase active center together with the second largest subunit. A single-stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol III. A bridging helix emanates from NRPC1 and crosses the cleft near the catalytic site and is thought to promote translocation [...] (1391 aa)
         
  0.738
NRPC2
Nuclear RNA polymerase C2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and NRPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft (1161 aa)
         
  0.694
PIT1
Pitchoun 1 (218 aa)
           
  0.670
RABG3c
RAB GTPase homolog G3C; Intracellular vesicle trafficking and protein transport (206 aa)
           
  0.631
GABP
Bidirectional amino acid transporter 1; May play a role in primary carbon metabolism and plant growth, by mediating the transport of GABA from the cytosol to mitochondria. When expressed in a heterologous system (yeast), imports Arg and Ala across the plasma membrane and exports Lys and Glu, but does not transport proline (516 aa)
   
 
  0.627
AT3G54470
Orotidine 5’-phosphate decarboxylase (476 aa)
         
  0.616
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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