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AT1G48510 AT1G48510 AT5G39840 AT5G39840 MLH3 MLH3 AT3G06920 AT3G06920 AT5G15700 AT5G15700 AT1G06710 AT1G06710 SURF1 SURF1 AT1G19290 AT1G19290 AT4G04670 AT4G04670 MEE22 MEE22 AT1G58060 AT1G58060
"AT1G19290" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G19290Pentatricopeptide repeat-containing protein (904 aa)    
Predicted Functional Partners:
SURF1
SURFEIT 1; Probably involved in the biogenesis of the COX complex (354 aa)
     
   
  0.492
MLH3
MUTL protein homolog 3; Involved in DNA mismatch repair (MMR), correcting insertion-deletion loops (IDLs) resulting from DNA replication, DNA damage or from recombination events between non-identical sequences during meiosis. Component of the MutLbeta heterodimer, which probably forms a ternary complex with the MutSbeta heterodimer that initially recognizes the DNA mismatches. This complex is thought to be responsible for directing the downsteam MMR events, including strand discrimination, excision, and resynthesis. Plays a major role in promoting meiotic crossing-over and is involved [...] (1169 aa)
     
   
  0.474
AT4G04670
tRNA wybutosine synthesizing protein 2-like protein; S-adenosyl-L-methionine-dependent transferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3’-position adjacent to the anticodon of eukaryotic phenylalanine tRNA (By similarity) (995 aa)
     
        0.453
AT5G39840
Putative ATP-dependent RNA helicase; Major helicase player in mitochondrial RNA metabolism. Component of the mitochondrial degradosome (mtEXO) complex, that degrades 3’ overhang double-stranded RNA with a 3’-to-5’ directionality in an ATP-dependent manner. ATPase and ATP- dependent multisubstrate helicase, able to unwind double-stranded (ds) DNA and RNA, and RNA/DNA heteroduplexes in the 5’-to-3’ direction. Plays a role in the RNA surveillance system in mitochondria; regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation of non coding [...] (776 aa)
     
   
  0.450
AT1G58060
RNA helicase family protein (1459 aa)
     
        0.451
AT1G48510
Surfeit locus 1 cytochrome c oxidase biogenesis protein; May be involved in the biogenesis of the COX complex (384 aa)
     
   
  0.449
AT5G15700
DNA-directed RNA polymerase 2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1051 aa)
     
 
  0.448
AT1G06710
Pentatricopeptide repeat-containing protein (997 aa)
     
     
0.443
AT3G06920
Pentatricopeptide repeat-containing protein (871 aa)
     
     
0.437
MEE22
MATERNAL EFFECT EMBRYO ARREST 22 (1297 aa)
     
        0.437
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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