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AT1G27520 AT1G27520 PTM PTM REV1 REV1 XPB1 XPB1 SAC3B SAC3B SAC3A SAC3A ATX2 ATX2 AT1G19485 AT1G19485 AT1G70620 AT1G70620 AT2G36720 AT2G36720
"AT1G19485" - transducin/WD-40 repeat-containing protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
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AT1G19485transducin/WD-40 repeat-containing protein (815 aa)    
Predicted Functional Partners:
AT1G27520
Putative alpha-mannosidase I MNS5; Can convert Man(9)GlcNAc(2) and Man(8)GlcNAc(2) into N- glycans with a terminal alpha-1,6-linked Man residue in the C- branch. Functions in the formation of unique N-glycan structures that are specifically recognized by components of the endoplasmic reticulum-associated degradation (ERAD) machinery, which leads to the degradation of misfolded glycoproteins. Most likely generates N-glycan signal on misfolded glycoproteins that is subsequently recognized by OS9. Required for ERAD of the heavily glycosylated and misfolded BRI1 variants BRI1-5 and BRI1-9. [...] (574 aa)
     
        0.463
REV1
DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair and translesion synthesis (TLS). Transfers a dCMP residue from dCTP to the 3’-end of a DNA primer in a template-dependent reaction. Mediates also the insertion of dTMP or dGMP when the opposite base is G, and, with a low efficiency, dGMP insertions opposite G, T, and C, dAMP insertions opposite G, A, and T, and dTMP insertion opposite A. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemi [...] (1105 aa)
     
        0.445
XPB1
DNA repair helicase XPB1; Putative ATP-dependent 3’-5’ DNA helicase involved in nucleotide excision repair (NER) of DNA. May be involved in RNA transcription by RNA polymerase II. Acts by opening DNA around either the RNA transcription start site or the DNA damage (By similarity). Required during the early stages of development, including seed germination (PubMed-11737776) (767 aa)
     
        0.444
AT1G70620
Cyclin-related (957 aa)
     
        0.440
ATX2
Trithorax-like protein 2; Histone methyltransferase (1083 aa)
     
        0.435
PTM
DNA binding and zinc-finger domain-containing protein; Membrane-bound transcription factor required for the plastid-to-nucleus retrogade signaling. Functions in multiple retrograde pathways. The plastid-to-nucleus signal plays an important role in the coordinated expression of both nuclear- and chloroplast-localized genes that encode photosynthesis-related proteins. In the nucleus, activates ABI4 transcription in a PHD- dependent manner associated with histone modifications. Localized primarily in the chloroplast outer membrane as dormant form and, in response to retrograde signals, is [...] (1706 aa)
     
        0.434
SAC3A
Yeast Sac3 homolog A; Component of the TREX-2 complex (transcription and export complex 2), a muliprotein complex that functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery (PubMed-19843313) (1006 aa)
     
        0.422
AT2G36720
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (1007 aa)
     
        0.421
SAC3B
Yeast Sac3 homolog B; Component of the TREX-2 complex (transcription and export complex 2), a muliprotein complex that functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery (PubMed-19843313) (1697 aa)
     
        0.414
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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