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AT2G15010 AT2G15010 AT5G59970.1 AT5G59970.1 AT5G01280 AT5G01280 AT5G11940 AT5G11940 AT5G55050 AT5G55050 AT5G65360.1 AT5G65360.1 CSLE1 CSLE1 AT1G19715 AT1G19715 AT3G27200 AT3G27200 AT3G48200 AT3G48200 AT3G20370 AT3G20370
"AT1G19715" - Mannose-binding lectin-like protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G19715Mannose-binding lectin-like protein (601 aa)    
Predicted Functional Partners:
AT3G20370
TRAF-like family protein (379 aa)
           
  0.803
AT3G27200
Cupredoxin superfamily protein (174 aa)
           
  0.633
AT2G15010
Putative thionin-2.3; Thionins are small plant proteins which are toxic to animal cells. They seem to exert their toxic effect at the level of the cell membrane. Their precise function is not known (135 aa)
           
  0.602
AT3G48200
Uncharacterized protein (1088 aa)
     
   
  0.573
AT5G65360.1
Histone H3; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (136 aa)
           
  0.559
AT5G59970.1
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (103 aa)
           
  0.559
AT5G55050
GDSL esterase/lipase (376 aa)
           
  0.559
AT5G11940
Subtilase family protein (762 aa)
           
  0.559
AT5G01280
Uncharacterized protein (460 aa)
           
  0.555
CSLE1
Cellulose synthase like E1; Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall (729 aa)
           
  0.550
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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