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emb1507 emb1507 AT5G28740 AT5G28740 EMB2765 EMB2765 PRL1 PRL1 AT4G38780 AT4G38780 AT5G41770 AT5G41770 AT1G10580 AT1G10580 MAC3A MAC3A MAC3B MAC3B At1g80070 At1g80070 SKIP SKIP
"emb1507" - Embryo defective 1507 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
emb1507Embryo defective 1507 (2171 aa)    
Predicted Functional Partners:
MAC3B
MOS4-associated complex 3B; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity). Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity (525 aa)
     
  0.999
At1g80070
ABNORMAL SUSPENSOR 2 (2359 aa)
     
  0.999
MAC3A
MOS4-associated complex 3A; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity). Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity (523 aa)
     
  0.999
AT5G28740
pre-mRNA-splicing factor SYF1 (917 aa)
     
  0.999
AT1G10580
pre-mRNA-processing factor 17 (573 aa)
     
  0.999
SKIP
Chromatin protein family; Splicing factor involved in post-transcriptional regulation of circadian clock and flowering time genes. Associates with the pre-mRNA of PRR7, PRR9, ELF3 and GI, and is necessary for the regulation of their alternative splicing and mRNA maturation. Probably involved in splice site recognition (613 aa)
     
  0.999
EMB2765
EMBRYO DEFECTIVE 2765 (1509 aa)
     
  0.999
AT4G38780
Pre-mRNA-processing-splicing factor (2332 aa)
     
  0.998
PRL1
Pleiotropic regulatory locus 1; Pleiotropic regulator of glucose, stress and hormone responses. Also regulates cytochrome P450 CYP90A1/CPD. Coordinates the expression of hormone- and stress-related genes and genes related to cell wall modification and growth, leading to altered sugar-dependent growth and developmental responses. Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. By suppressing the expression of several (1)O(2)- responsive genes, PRL1 seems to play a major role in mod [...] (486 aa)
     
  0.998
AT5G41770
Putative crooked neck protein / cell cycle protein (705 aa)
     
  0.998
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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