Full Link:
STRINGSTRING
AT1G42440 AT1G42440 AT4G02400 AT4G02400 AT1G50920 AT1G50920 AT4G19610 AT4G19610 AT4G34910 AT4G34910 AT1G13160 AT1G13160 AT5G39840 AT5G39840 AT1G22960 AT1G22960 ATSUV3 ATSUV3 SURF1 SURF1 AT1G48510 AT1G48510
"AT1G22960" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G22960Pentatricopeptide repeat-containing protein (718 aa)    
Predicted Functional Partners:
AT5G39840
Putative ATP-dependent RNA helicase; Major helicase player in mitochondrial RNA metabolism. Component of the mitochondrial degradosome (mtEXO) complex, that degrades 3’ overhang double-stranded RNA with a 3’-to-5’ directionality in an ATP-dependent manner. ATPase and ATP- dependent multisubstrate helicase, able to unwind double-stranded (ds) DNA and RNA, and RNA/DNA heteroduplexes in the 5’-to-3’ direction. Plays a role in the RNA surveillance system in mitochondria; regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation of non coding [...] (776 aa)
     
   
  0.567
SURF1
SURFEIT 1; Probably involved in the biogenesis of the COX complex (354 aa)
     
   
  0.501
AT1G13160
ARM repeat superfamily protein (804 aa)
     
   
  0.483
AT4G34910
DEAD-box ATP-dependent RNA helicase 16 (626 aa)
     
        0.477
AT1G42440
Uncharacterized protein (793 aa)
     
        0.466
AT4G19610
Nucleotide/nucleic acid binding protein (816 aa)
     
        0.464
ATSUV3
ATP-dependent RNA helicase, mitochondrial (SUV3); Major helicase player in mitochondrial RNA metabolism. Component of the mitochondrial degradosome (mtEXO) complex, that degrades 3’ overhang double-stranded RNA with a 3’-to-5’ directionality in an ATP-dependent manner. ATPase and ATP- dependent multisubstrate helicase, able to unwind double-stranded (ds) DNA and RNA, and RNA/DNA heteroduplexes in the 5’-to-3’ direction. Plays a role in the RNA surveillance system in mitochondria; regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation o [...] (571 aa)
     
   
  0.450
AT1G48510
Surfeit locus 1 cytochrome c oxidase biogenesis protein; May be involved in the biogenesis of the COX complex (384 aa)
     
   
  0.449
AT4G02400
U3 ribonucleoprotein-like protein (855 aa)
     
   
  0.447
AT1G50920
Nucleolar GTP-binding protein; Involved in the biogenesis of the 60S ribosomal subunit (671 aa)
     
        0.437
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (2%)