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AT2G01250 AT2G01250 AT5G02870 AT5G02870 AT3G53430 AT3G53430 RPL23AB RPL23AB AT4G10450 AT4G10450 AT5G15200 AT5G15200 RPL27AB RPL27AB SAC52 SAC52 RPL5A RPL5A RPL23AA RPL23AA EMB2296 EMB2296
"RPL27AB" - 60S ribosomal protein L27a-2 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPL27AB60S ribosomal protein L27a-2 (146 aa)    
Predicted Functional Partners:
EMB2296
Embryo defective 2296 (258 aa)
   
  0.999
RPL23AB
Ribosomal protein L23AB; Binds to a specific region on the 26S rRNA (154 aa)
   
  0.999
RPL23AA
Ribosomal protein L23AA; Binds to a specific region on the 26S rRNA (154 aa)
   
  0.999
AT5G02870
60S ribosomal protein L4-2 (407 aa)
   
  0.999
SAC52
SUPPRESSOR OF ACAULIS 52; Ribosomal protein involved in translational regulation (PubMed-18694459). Contribute to general translation under UV-B stress (PubMed-20516338, PubMed-23886624). Involved in the NIK1- mediated defense response to geminivirus infection (PubMed-18789471, PubMed-19112492). Acts coordinately with LIMYB as a transcriptional repressor (PubMed-25707794) (220 aa)
   
  0.999
RPL5A
Ribosomal protein L5; Binds to 5S ribosomal RNA (301 aa)
   
  0.999
AT2G01250
60S ribosomal protein L7-2 (242 aa)
   
  0.999
AT4G10450
60S ribosomal protein L9-2 (194 aa)
   
  0.999
AT5G15200
Ribosomal protein S4 (198 aa)
   
  0.999
AT3G53430
60S ribosomal protein L12-2; Binds directly to 26S ribosomal RNA (166 aa)
   
  0.999
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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