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NPX1 NPX1 UBP16 UBP16 BGLU24 BGLU24 ZTP29 ZTP29 AT1G23200 AT1G23200 SRO2 SRO2 AT2G33010 AT2G33010 PARP1 PARP1 PARP2 PARP2 AT1G61420 AT1G61420 AT1G66260 AT1G66260
"SRO2" - Similar to RCD one 2 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRO2Similar to RCD one 2; Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses (323 aa)    
Predicted Functional Partners:
AT2G33010
Ubiquitin-associated (UBA) protein (649 aa)
           
  0.677
AT1G61420
Putative S-locus protein kinase (807 aa)
           
  0.671
PARP2
poly(ADP-ribose) polymerase 2; Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity) (637 aa)
           
  0.609
PARP1
POLY(ADP-RIBOSE) POLYMERASE 1; Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity) (983 aa)
           
  0.557
BGLU24
Beta glucosidase 24 (533 aa)
           
  0.553
UBP16
Ubiquitin-specific protease 16; Recognizes and hydrolyzes the peptide bond at the C- terminal Gly of ubiquitin. Involved in the processing of poly- ubiquitin precursors as well as that of ubiquitinated proteins. Involved in salt tolerance by modulating sodium transport activity and repressing cell death at least partially through modulating SHM1 stability and activity (PubMed-23232097). Involved in cadmium tolerance by interacting with HIPP27 and probably modulating its stability (PubMed-23857362) (1008 aa)
           
  0.499
AT1G66260
RNA recognition motif-containing protein; Export adapter involved in nuclear export of spliced and unspliced mRNA (295 aa)
           
  0.495
ZTP29
ZIP metal ion transporter; Zinc transporter involved response to salt stress. May act through the regulation of zinc levels required to induce the unfolded protein response (UPR) pathway (276 aa)
           
  0.491
AT1G23200
Pectinesterase 6; Acts in the modification of cell walls via demethylesterification of cell wall pectin (554 aa)
           
  0.474
NPX1
Nuclear protein X1; Acts as a negative regulator in plant response to changes in environmental conditions through the control of ABA- regulated gene expression (1061 aa)
           
  0.449
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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