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SDN3 SDN3 AT1G63660 AT1G63660 AT5G25800 AT5G25800 SDN2 SDN2 AT3G15080 AT3G15080 AT3G18580 AT3G18580 AT1G24090 AT1G24090 AT5G40310 AT5G40310 MTSSB MTSSB AT3G50090 AT3G50090 SDN1 SDN1
"AT1G24090" - RNase H family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G24090RNase H family protein (353 aa)    
Predicted Functional Partners:
AT1G63660
GMP-synthase-C and glutamine amidotransferase domain-containing protein (534 aa)
   
   
  0.797
AT3G18580
Single-strand DNA-binding protein (217 aa)
     
 
  0.706
AT3G15080
Exonuclease-like protein (275 aa)
   
   
  0.693
MTSSB
Single-stranded DNA-binding protein; Binds to ss-DNA (201 aa)
     
 
  0.671
AT5G25800
Small RNA degrading nuclease 5; Probable 3’-5’ exonuclease degrading single-stranded small RNAs (567 aa)
   
   
  0.646
SDN3
Small RNA degrading nuclease 3; 3’-5’ exonuclease degrading single-stranded small RNAs (782 aa)
   
   
  0.631
AT5G40310
Exonuclease-like protein (348 aa)
   
   
  0.631
SDN2
Small RNA degrading nuclease 2; 3’-5’ exonuclease degrading single-stranded small RNAs (466 aa)
   
   
  0.631
SDN1
Small RNA degrading nuclease 1; 3’-5’ exonuclease degrading single-stranded small RNAs (409 aa)
   
   
  0.631
AT3G50090
Exonuclease family protein; Putative 3’-5’ exonuclease degrading single-stranded small RNAs (322 aa)
   
   
  0.631
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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