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AT4G38710 AT4G38710 AT4G33380 AT4G33380 ROC5 ROC5 TBP2 TBP2 TIP4;1 TIP4;1 NRPB1 NRPB1 AT2G28390 AT2G28390 AT4G36130 AT4G36130 AT1G31300 AT1G31300 UBQ11 UBQ11 EIF4A1 EIF4A1
"AT1G31300" - TRAM, LAG1 and CLN8 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G31300TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (278 aa)    
Predicted Functional Partners:
AT4G36130
60S ribosomal protein L8-3 (258 aa)
           
  0.923
TBP2
TATA binding protein 2; General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre- initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II (200 aa)
           
  0.910
AT4G38710
Glycine-rich protein; Promotes the eIF4F and eIF4A RNA-dependent ATP- hydrolysis activity with different efficiency depending on mRNAs, thus providing mRNA discrimination during initiation of translation (465 aa)
           
  0.877
AT4G33380
Uncharacterized protein (328 aa)
           
  0.678
UBQ11
Ubiquitin 11; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked- Lys-11-linked is involved in ERAD (endoplasmic r [...] (229 aa)
       
 
  0.671
ROC5
Rotamase cyclophilin 5; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (172 aa)
           
  0.606
NRPB1
RNA polymerase II large subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB1 is part of the core element with the central large cleft, the cl [...] (1839 aa)
           
  0.600
AT2G28390
SAND family protein (607 aa)
           
  0.505
EIF4A1
Translational initiation factor 4A-1 (415 aa)
           
  0.502
TIP4;1
Aquaporin TIP4-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. Transports urea in yeast cells in a pH-independent manner (249 aa)
           
  0.475
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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