Full Link:
STRINGSTRING
AGY1 AGY1 SKL1 SKL1 SIGF SIGF AT3G08740 AT3G08740 DG1 DG1 SCO1 SCO1 TOC159 TOC159 SCO2 SCO2 AT1G33290 AT1G33290 AT4G31040 AT4G31040 CRR6 CRR6
"AT1G33290" - Putative stage III sporulation protein AA in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G33290Putative stage III sporulation protein AA (379 aa)    
Predicted Functional Partners:
DG1
DELAYED GREENING 1; Involved in the regulation of early chloroplast development and chloroplast gene expression in a SIGF-dependent manner (798 aa)
     
   
  0.698
AT3G08740
Elongation factor EF-P (236 aa)
   
        0.591
SCO2
SNOWY COTYLEDON 2; Protein disulfide-isomerase involved in chloroplast development in cotyledons. Involved in the process of vesicle- derived thylakoid formation, probably at the level of the integration and folding of LHCB proteins at the initial location of integration. Acts only in germinating seeds after dormancy, during the transition from heterotrophic to autotrophic growth (187 aa)
     
   
  0.581
SIGF
RNApolymerase sigma-subunit F; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. Regulates transcription in chloroplast in a DG1-dependent manner. Involved in light-dependent chloroplast development. Required during early plant development and primary leaf formation (547 aa)
     
   
  0.575
SCO1
SNOWY COTYLEDON 1; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A- site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Required for the eoplasts redifferentiation i [...] (783 aa)
     
   
  0.553
TOC159
Translocase of chloroplast 159; GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Required for chloroplast biogenesis. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast (1503 aa)
     
   
  0.522
AT4G31040
CemA-like proton extrusion protein-related (438 aa)
   
        0.517
SKL1
Shikimate kinase like 1; Required for chloroplast biogenesis (280 aa)
   
        0.496
AGY1
Albino or Glassy Yellow 1 (1042 aa)
     
        0.466
CRR6
Chlororespiratory reduction 6; Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex of the photosynthetic electron transport chain. May function in assembly or stabilization of the NDH complex (PubMed-16648216, PubMed-20444231). Required for the accumulation of NDH subcomplex A, which is a core part of NDH. May be involved in post- translational steps during the biogenesis of subcomplex A (PubMed-20444231) (246 aa)
   
        0.466
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (1%)