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eIF6A eIF6A RPL3P RPL3P eIF6B eIF6B EMB2207 EMB2207 AT3G22980 AT3G22980 NMD3 NMD3 RPL3B RPL3B STV1 STV1 RPL24A RPL24A AT1G43860 AT1G43860 AT1G23280 AT1G23280
"AT1G43860" - Sequence-specific DNA binding transcription factor in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
AT1G43860Sequence-specific DNA binding transcription factor (370 aa)    
Predicted Functional Partners:
eIF6A
Eukaryotic initiation facor 6A; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis (245 aa)
   
 
  0.985
eIF6B
Eukaryotic initiation factor 6B; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis (247 aa)
   
 
  0.985
AT3G22980
Elongation factor EF-2 (1015 aa)
   
 
  0.983
NMD3
Nonsense-Mediated mRNA Decay 3 (516 aa)
     
 
  0.975
EMB2207
Ribosomal protein 1 (389 aa)
     
 
  0.956
RPL3B
R-protein L3 B (390 aa)
       
 
  0.953
AT1G23280
MAK16 protein-related (303 aa)
     
      0.944
STV1
SHORT VALVE1; Might have an extraribosomal function in reinitiation of translation of ETTIN and MONOPTEROS genes that are involved in the auxin-mediated gynoecium patterning (163 aa)
     
 
  0.939
RPL24A
Ribosomal protein L24; Might have an extraribosomal function in reinitiation of translation (164 aa)
     
 
  0.939
RPL3P
50S ribosomal protein L3-2; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (324 aa)
     
      0.906
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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