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AT2G29070 AT2G29070 AT4G38930 AT4G38930 UFD1 UFD1 AT5G15400 AT5G15400 NPL41 NPL41 DER1 DER1 AT2G47970 AT2G47970 AT1G50140 AT1G50140 DER2.1 DER2.1 DER2.2 DER2.2 AT4G15420 AT4G15420
"AT1G50140" - P-loop containing NTPase domain-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G50140P-loop containing NTPase domain-containing protein (1003 aa)    
Predicted Functional Partners:
AT5G15400
U-box domain-containing protein; Ubiquitin-protein ligase that may function as an E3 ligase in conjunction with specific E1 and E2 ligases. May also function as an E4 ligase mediating the assembly of polyubiquitin chain assembly on substrates monoubiquitinated by another E3 ubiquitin ligase (1038 aa)
     
 
  0.800
AT4G38930
Ubiquitin fusion degradation UFD1 family protein (315 aa)
     
 
  0.742
UFD1
Ubiquitin fusion degradation 1 (340 aa)
     
 
  0.740
AT4G15420
Ubiquitin fusion degradation UFD1 family protein (561 aa)
     
 
  0.731
AT2G29070
Ubiquitin fusion degradation UFD1-like protein (312 aa)
     
 
  0.731
NPL41
NPL4-like protein 1; May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome (413 aa)
     
 
  0.720
AT2G47970
NPL4-like protein 2; May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome (413 aa)
     
 
  0.720
DER1
DERLIN-1; May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins (266 aa)
       
 
  0.687
DER2.1
DERLIN-2.1; May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
       
 
  0.687
DER2.2
DERLIN-2.2; May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
       
 
  0.687
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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