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AT1G11270 AT1G11270 AT3G43990 AT3G43990 AT5G37270 AT5G37270 AT1G50440 AT1G50440 AT3G45555 AT3G45555 AT5G42200 AT5G42200 NPL41 NPL41 RIE1 RIE1 BRIZ1 BRIZ1 AT2G47970 AT2G47970 AT2G34000 AT2G34000
"AT1G50440" - RING/FYVE/PHD zinc finger-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G50440RING/FYVE/PHD zinc finger-containing protein (250 aa)    
Predicted Functional Partners:
AT3G43990
Bromo-adjacent homology (BAH) domain-containing protein (380 aa)
           
  0.922
AT5G37270
RING/U-box superfamily protein (208 aa)
     
   
  0.869
AT2G34000
RING/U-box superfamily protein (151 aa)
     
   
  0.869
AT3G45555
RING/U-box protein (213 aa)
           
  0.862
AT5G42200
RING/U-box superfamily protein; E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro (163 aa)
     
   
  0.852
AT1G11270
F-box and associated interaction domain-containing protein (312 aa)
           
  0.780
NPL41
NPL4-like protein 1; May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome (413 aa)
     
 
  0.776
AT2G47970
NPL4-like protein 2; May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome (413 aa)
     
 
  0.776
BRIZ1
BRAP2 RING ZnF UBP domain-containing protein 1 (488 aa)
     
   
  0.759
RIE1
E3 ubiquitin protein ligase RIE1; Probable E3 ubiquitin-protein ligase required for embryo development (359 aa)
     
   
  0.686
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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