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AT5G39840 AT5G39840 AT5G12220 AT5G12220 AT5G38720 AT5G38720 SURF1 SURF1 PMD1 PMD1 AT1G02410 AT1G02410 AT1G52640 AT1G52640 AT1G48510 AT1G48510 DEK1 DEK1 BPS1 BPS1 LRS1 LRS1
"AT1G52640" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G52640Pentatricopeptide repeat-containing protein (523 aa)    
Predicted Functional Partners:
LRS1
LATERAL ROOT STIMULATOR 1 (753 aa)
           
  0.958
BPS1
BYPASS 1; Required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development (349 aa)
           
  0.736
DEK1
DEFECTIVE KERNEL 1; Essential protein involved in epiderm development. Required for aleurone cell development in the endosperm probably by maintaining and restricting the aleurone and embryonic epidermal L1 cell-layer fates as well as meristems organization. Involved in the maintenance of adaxial/abaxial axis information in developing leaves, probably by regulating cell proliferation and expansion. Does not need calcium ions to be active. Required for the formation of giant cells in sepals by determining cell fate and promoting endoreplication (2179 aa)
           
  0.635
AT5G39840
Putative ATP-dependent RNA helicase; Major helicase player in mitochondrial RNA metabolism. Component of the mitochondrial degradosome (mtEXO) complex, that degrades 3’ overhang double-stranded RNA with a 3’-to-5’ directionality in an ATP-dependent manner. ATPase and ATP- dependent multisubstrate helicase, able to unwind double-stranded (ds) DNA and RNA, and RNA/DNA heteroduplexes in the 5’-to-3’ direction. Plays a role in the RNA surveillance system in mitochondria; regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation of non coding [...] (776 aa)
     
   
  0.457
AT5G38720
Uncharacterized protein (306 aa)
     
        0.453
SURF1
SURFEIT 1; Probably involved in the biogenesis of the COX complex (354 aa)
     
   
  0.449
AT1G48510
Surfeit locus 1 cytochrome c oxidase biogenesis protein; May be involved in the biogenesis of the COX complex (384 aa)
     
   
  0.449
AT5G12220
Las1-like family protein (611 aa)
     
        0.435
AT1G02410
Cytochrome c oxidase assembly protein CtaG / Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I (287 aa)
       
 
  0.433
PMD1
Tropomyosin-related protein; Involved in morphogenesis and proliferation of peroxisomes and mitochondria, independently from the previously defined pathway controlled by the FIS1-DRP3 complex (318 aa)
     
        0.419
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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