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CYP38 CYP38 AT3G25660 AT3G25660 AT2G02410 AT2G02410 AT1G55140 AT1G55140 EMB3129 EMB3129 AT3G13180 AT3G13180 AT1G53120 AT1G53120 TOC64-III TOC64-III CRTISO CRTISO AT1G65070 AT1G65070 AT1G78010 AT1G78010
"AT1G53120" - RNA-binding S4 domain-containing protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G53120RNA-binding S4 domain-containing protein (320 aa)    
Predicted Functional Partners:
EMB3129
GTP-binding protein; GTPase that may function in chloroplast ribosome assembly (Probable) (372 aa)
   
        0.529
AT1G55140
Ribonuclease III-like protein (237 aa)
   
        0.521
AT2G02410
Uncharacterized protein (308 aa)
   
          0.450
AT3G25660
Amidase family protein; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln) (537 aa)
     
   
  0.446
AT1G65070
DNA mismatch repair protein MutS2 (876 aa)
   
        0.444
AT3G13180
Ribosomal RNA small subunit methyltransferase B (523 aa)
   
        0.434
AT1G78010
Putative tRNA modification GTPase (560 aa)
   
        0.424
CRTISO
Carotenoid isomerase; Carotene cis-trans-isomerase that converts 7,9,9’-tri- cis-neurosporene to 9’-cis-neurosporene and 7,9,9’,7’-tetra-cis- lycopene (also known as prolycopene) into all-trans-lycopene. Isomerization requires redox-active components, suggesting that isomerization is achieved by a reversible redox reaction acting at specific double bonds. Isomerizes adjacent cis-double bonds at C7 and C9 pairwise into the trans-configuration, but is incapable of isomerizing single cis-double bonds at C9 and C9’. Carotenoid biosynthesis is partly required to form the prolamellar bodies [...] (595 aa)
     
        0.420
TOC64-III
Translocon at the outer membrane of chloroplasts 64-III; Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane. Not essential for an efficient import of pre-proteins into plastids (589 aa)
     
   
  0.406
CYP38
Cyclophilin 38; Required for the assembly and stabilization of PSII, but has no PPIases activity (437 aa)
   
        0.403
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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