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AT1G63250 AT1G63250 AT4G16630 AT4G16630 PMH2 PMH2 AT5G54910 AT5G54910 AT3G18600 AT3G18600 AT1G54380 AT1G54380 STRS1 STRS1 AT3G11500 AT3G11500 SNRNP-G SNRNP-G AT3G07590 AT3G07590 SmD3 SmD3
"AT1G54380" - Spliceosome protein-related in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G54380Spliceosome protein-related (515 aa)    
Predicted Functional Partners:
AT3G11500
Small nuclear ribonucleoprotein G (79 aa)
     
      0.906
SNRNP-G
Small nuclear ribonucleoprotein; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (80 aa)
     
      0.906
STRS1
STRESS RESPONSE SUPPRESSOR 1; ATP-dependent RNA helicase required for 60S ribosomal subunit synthesis. Involved in efficient pre-rRNA processing, predominantly at site A3, which is necessary for the normal formation of 25S and 5.8S rRNAs (By similarity) (537 aa)
     
 
  0.669
AT5G54910
DEAD-box ATP-dependent RNA helicase 32 (739 aa)
     
 
  0.663
SmD3
snRNP core protein SMD3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). May play a minor role in the splicing of cellular pre-mRNAs (PubMed-21421416) (128 aa)
     
 
  0.641
AT3G18600
DEAD-box ATP-dependent RNA helicase 51 (568 aa)
     
 
  0.639
PMH2
Putative mitochondrial RNA helicase 2 (616 aa)
     
 
  0.630
AT3G07590
Small nuclear ribonucleoprotein D1 (114 aa)
     
 
  0.623
AT4G16630
DEAD-box ATP-dependent RNA helicase 28 (789 aa)
     
 
  0.623
AT1G63250
DEA(D/H)-box RNA helicase family protein (798 aa)
     
 
  0.613
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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