Full Link:
STRINGSTRING
PME31 PME31 TAF2 TAF2 AT4G39130 AT4G39130 AT3G29636 AT3G29636 AT1G54410 AT1G54410 AT4G38410 AT4G38410 ECHID ECHID AT2G23110 AT2G23110 LEA LEA SK2 SK2 SK3 SK3
"AT1G54410" - Dehydrin family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G54410Dehydrin family protein; Intrinsically disordered and metal-binding protein. Binds to the divalent cations cobalt, nickel, copper and zinc, but not to magnesium, calcium, manganese or cadmium (Ref.8). Binding to metal ions decreases disordered state, decreases susceptibility to trypsin and promotes self-association. Can reduce the formation of reactive oxygen species (ROS) in a copper-ascorbate in vitro system (PubMed-23382551) (98 aa)    
Predicted Functional Partners:
SK3
SKP1-like 3; Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F- box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F- box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity) (163 aa)
           
  0.678
AT3G29636
Transferase-related (199 aa)
           
  0.676
AT2G23110
Late embryogenesis abundant protein, group 6 (92 aa)
           
  0.673
AT4G39130
Dehydrin family protein (151 aa)
           
  0.671
LEA
Dehydrin LEA (185 aa)
           
  0.670
TAF2
TBP-associated factor 2; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription (1390 aa)
           
  0.636
SK2
Shikimate kinase 2; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (308 aa)
           
  0.635
AT4G38410
Putative dehydrin (163 aa)
           
  0.635
ECHID
Naphthoate synthase; Involved in the biosynthesis of phylloquinone (vitamin K1). Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA) (By similarity) (337 aa)
           
  0.635
PME31
Pectinesterase 31; Acts in the modification of cell walls via demethylesterification of cell wall pectin (By similarity). Acts in a blockwise manner, resulting in a cell wall rigidification (317 aa)
           
  0.634
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (2%)