Full Link:
STRINGSTRING
NAC090 NAC090 PUP4 PUP4 NAC061 NAC061 XERO1 XERO1 NAC085 NAC085 NAC044 NAC044 AT1G54890 AT1G54890 IPT6 IPT6 NAC071 NAC071 NAC13 NAC13 NAC1 NAC1
"AT1G54890" - Late embryogenesis abundant-related protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G54890Late embryogenesis abundant-related protein (347 aa)    
Predicted Functional Partners:
NAC085
NAC domain containing protein 85 (350 aa)
           
  0.738
NAC044
NAC domain containing protein 44 (370 aa)
           
  0.738
NAC071
NAC domain containing protein 71 (262 aa)
           
  0.558
PUP4
Purine permease 4 (382 aa)
           
  0.497
XERO1
Dehydrin xero 1 (128 aa)
           
  0.493
NAC061
NAC domain containing protein 61 (241 aa)
           
  0.491
NAC090
NAC domain containing protein 90 (235 aa)
           
  0.475
IPT6
Isopentenyltransferase 6; Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP (342 aa)
           
  0.474
NAC13
NAC domain protein 13; Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in oxidative stress tolerance by mediating regulation of mitochondrial retrograde signaling during mitochondrial dysfunction. Interacts directly with the mitochondrial dysfunction DNA consensus motif 5’-CTTGNNNNNCA[AC]G-3’, a cis-regulatory elements of several mitochondrial retrograde regulation-induced genes, and triggers increased oxidative stress tolerance (528 aa)
           
  0.449
NAC1
NAC domain containing protein 1; Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3 (324 aa)
           
  0.445
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (2%)