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RARE1 RARE1 OTP84 OTP84 AT3G20930 AT3G20930 PPOP1 PPOP1 AT1G55040 AT1G55040 AT1G70650 AT1G70650 AT2G18220 AT2G18220 MORF9 MORF9 OTP82 OTP82 CRR28 CRR28 PDE247 PDE247
"AT1G55040" - Zinc finger in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Textmining
[Homology]
Score
AT1G55040Zinc finger (Ran-binding) family protein (849 aa)    
Predicted Functional Partners:
AT3G20930
RNA recognition motif-containing protein (374 aa)
           
  0.745
OTP84
ORGANELLE TRANSCRIPT PROCESSING 84; Involved in RNA editing events in chloroplasts. Required for the editing of a single site in ndhB and ndhF transcripts, which are two plastid-encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Required for the editing of a single site in psbZ. Required for optimal activity of the NDH complex of the photosynthetic electron transport chain (890 aa)
           
  0.670
MORF9
Multiple organellar RNA editing factor 9; Involved in organellar RNA editing. Required for the processing of multiple editing sites in plastids (PubMed-22411807, PubMed-23818871) (232 aa)
           
  0.670
RARE1
REQUIRED FOR ACCD RNA EDITING 1 (752 aa)
     
   
  0.634
OTP82
ORGANELLE TRANSCRIPT PROCESSING 82; Involved in multiple sites RNA editing events in chloroplasts. Involved in the editing of the site 9 of ndhB (ndhB- 9) and site 1 of ndhG (ndhG-1) transcripts, which are two plastid- encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Not essential for the activity of the NDH complex of the photosynthetic electron transport chain (741 aa)
           
  0.601
PPOP1
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX (537 aa)
           
  0.558
CRR28
CHLORORESPIRATORY REDUCTION28; Involved in multiple sites RNA editing events in chloroplasts. Involved in the editing of the site 2 of ndhB (ndhB- 2) and site 3 of ndhD (ndhD-3) transcripts, which are two plastid- encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Required for the activity of the NDH complex of the photosynthetic electron transport chain (638 aa)
           
  0.558
AT1G70650
Ran BP2/NZF zinc finger-like superfamily protein (595 aa)
     
   
0.476
PDE247
Pigment defective 247 (500 aa)
     
   
  0.462
AT2G18220
Noc2p family (764 aa)
     
        0.438
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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