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STRINGSTRING
FZF FZF AT4G04940 AT4G04940 PAPS3 PAPS3 DHS DHS PIP1B PIP1B ECT4 ECT4 nPAP nPAP RD28 RD28 PAPS1 PAPS1 RTE1 RTE1 PAPS2 PAPS2
"ECT4" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECT4Uncharacterized protein (599 aa)    
Predicted Functional Partners:
DHS
Deoxyhypusine synthase; Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue. Also able to produce homospermidine from putrescine (By similarity) (368 aa)
     
   
  0.700
RTE1
Uncharacterized protein; Acts at an early step in the ethylene signaling pathway. Positively regulates ETR1, leading to the negative regulation of ethylene responses (250 aa)
           
  0.632
RD28
Aquaporin PIP2-3; Water channel required to facilitate the transport of water across cell membrane; mercury-insensitive (285 aa)
           
  0.606
PIP1B
Aquaporin PIP1-2 (301 aa)
           
  0.600
FZF
Zinc finger protein 622; Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed-24038679). Required for leaf growth under cold temperature conditions (PubMed-24038679) (395 aa)
     
   
  0.498
nPAP
Nuclear poly(a) polymerase; Essential protein (PubMed-19956626). Polymerase that creates the 3’-poly(A) tail of mRNA’s (PubMed-15297145). Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus (By similarity) (765 aa)
     
 
  0.456
PAPS3
poly(A) polymerase 3; Essential protein (PubMed-19956626). Polymerase that creates the 3’-poly(A) tail of mRNA’s (PubMed-15297145). Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus (By similarity) (507 aa)
     
 
  0.456
PAPS2
poly(A) polymerase 2; Essential protein (PubMed-19956626). Polymerase that creates the 3’-poly(A) tail of mRNA’s (PubMed-15297145). Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus (By similarity). Mediates the polyadenylation of RNAs that are associated with polynucleotide phosphorylase (e.g. PNP1) (PubMed-10872823) (800 aa)
     
 
  0.456
PAPS1
poly(A) polymerase 1; Essential protein (PubMed-19956626). Polymerase that creates the 3’-poly(A) tail of mRNA’s (PubMed-15297145). Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus (By similarity) (713 aa)
     
 
  0.456
AT4G04940
transducin/WD40 domain-containing protein (910 aa)
     
        0.435
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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