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AT5G28900 AT5G28900 AT1G58110 AT1G58110 AT3G45260 AT3G45260 AT3G09180 AT3G09180 AT1G55590 AT1G55590 AT1G55630 AT1G55630 AT3G57200 AT3G57200 AT3G47840 AT3G47840 AT2G02030 AT2G02030 AT2G02061 AT2G02061 AT2G01920 AT2G01920
"AT1G55590" - F-box protein At-B in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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Textmining
[Homology]
Score
AT1G55590F-box protein At-B (607 aa)    
Predicted Functional Partners:
AT1G55630
Pentatricopeptide repeat-containing protein (477 aa)
           
  0.678
AT3G09180
Uncharacterized protein; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity) (402 aa)
     
   
  0.606
AT2G02061
Nucleotide-diphospho-sugar transferase family protein (408 aa)
           
  0.602
AT2G02030
F-box protein (334 aa)
           
  0.602
AT3G47840
Pentatricopeptide repeat-containing protein (706 aa)
           
  0.559
AT3G45260
C2H2-like zinc finger protein; Probable transcription factor (446 aa)
           
  0.559
AT1G58110
Basic helix-loop-helix domain-containing protein (374 aa)
           
  0.559
AT2G01920
ENTH/VHS/GAT family protein (312 aa)
           
  0.553
AT3G57200
Uncharacterized protein; Involved in the coordination between cell elongation and cellulose synthesis by promoting the expression of genes involved in cell elongation and cellulose synthesis. Acts as a regulator of plasmodesmatal permeability. Maybe a glycosyltransferase (514 aa)
           
  0.506
AT5G28900
Calcium-binding EF-hand family protein; Probable regulatory subunit of type 2A protein phosphatase (536 aa)
           
  0.489
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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