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AT1G18340 AT1G18340 XPB2 XPB2 AT4G17020 AT4G17020 AT4G30825 AT4G30825 AT4G30820 AT4G30820 XPB1 XPB1 UVH6 UVH6 GTF2H2 GTF2H2 UVH3 UVH3 AT1G55750 AT1G55750 CAK4 CAK4
"AT1G55750" - Transcription initiation factor TFIIH subunit H1 in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G55750Transcription initiation factor TFIIH subunit H1; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (591 aa)    
Predicted Functional Partners:
UVH6
DNA repair helicase UVH6; Putative ATP-dependent 5’-3’ DNA helicase involved in nucleotide excision repair (NER) of UV-damaged DNA. May open DNA around the damage. Essential during plant growth. May negatively regulate a common response program mediated by UV damage and heat stress, that leads to tissue death and reduced chloroplast function (758 aa)
     
  0.999
AT4G30820
CDK-activating kinase assembly factor MAT1 (178 aa)
     
  0.999
CAK4
CDK-activating kinase 4; Forms a stable complex with cyclin CYCH1-1 that phosphorylates human CDK2 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II (348 aa)
     
  0.999
AT4G17020
Transcription factor-related; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (482 aa)
     
  0.997
AT4G30825
Pentatricopeptide repeat-containing protein (904 aa)
     
 
  0.997
AT1G18340
Transcription initiation factor TFIIH subunit H3; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (301 aa)
     
  0.997
GTF2H2
General transcription factor II H2; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for transcription, and is involved in nucleotide excision repair (NER) of damaged DNA. Can restore UV resistance in the NER-deficient ssl1-1 yeast mutant (421 aa)
     
  0.997
XPB2
DNA repair helicase XPB2; Putative ATP-dependent 3’-5’ DNA helicase involved in nucleotide excision repair (NER) of DNA. May be involved in RNA transcription by RNA polymerase II. Acts by opening DNA around either the RNA transcription start site or the DNA damage (766 aa)
     
  0.995
XPB1
DNA repair helicase XPB1; Putative ATP-dependent 3’-5’ DNA helicase involved in nucleotide excision repair (NER) of DNA. May be involved in RNA transcription by RNA polymerase II. Acts by opening DNA around either the RNA transcription start site or the DNA damage (By similarity). Required during the early stages of development, including seed germination (PubMed-11737776) (767 aa)
     
  0.995
UVH3
DNA repair protein UVH3; Putative single-stranded DNA endonuclease involved in nucleotide excision repair (NER) of UV- and oxidative damaged DNA. May make the 3’-incision step in NER. Seems to play a role in senescence program (1479 aa)
     
  0.995
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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