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PPR336 PPR336 NFD1 NFD1 AT4G35850 AT4G35850 PNM1 PNM1 CYCA3;1 CYCA3;1 AT4G04940 AT4G04940 AT1G55890 AT1G55890 ROC2 ROC2 AT1G52930 AT1G52930 AT3G13160 AT3G13160 KRP2 KRP2
"AT1G55890" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Databases
Textmining
[Homology]
Score
AT1G55890Pentatricopeptide repeat-containing protein (398 aa)    
Predicted Functional Partners:
CYCA3;1
Cyclin A3-1 (355 aa)
       
      0.828
KRP2
KIP-related protein 2; Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. Regulates cell division which is crucial for plant growth, development and morphogenesis. May regulate early lateral root initiation by blocking the G1/S phase transition. Controls the mitosis-to-endocycle transition and the onset of the endoreduplication cycle during leaf development through inhibition of mitotic CDKA-1 kinase complexes. Specifically targets CDKA-1 (209 aa)
       
      0.828
ROC2
Rotamase cyclophilin 2; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (176 aa)
     
        0.657
NFD1
50S ribosomal protein L21; This protein binds to 23S ribosomal RNA in the presence of protein L20 (By similarity). Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus, and during double fertilization of the egg cell and the central cell (PubMed-16698901) (270 aa)
     
        0.642
AT1G52930
Ribosomal RNA processing Brix domain protein (320 aa)
     
        0.641
AT3G13160
Pentatricopeptide repeat-containing protein (394 aa)
     
     
0.615
AT4G35850
Pentatricopeptide repeat-containing protein (444 aa)
     
        0.606
PPR336
Pentatricopeptide repeat 336; May be involved in translation through its association with polysomes. Could bind RNA (408 aa)
     
     
0.597
AT4G04940
transducin/WD40 domain-containing protein (910 aa)
     
   
  0.595
PNM1
Pentatricopeptide repeat-containing protein; RNA-binding protein that functions in both mitochondrion and nucleus. In mitochondrion, it is associated with polysomes and may play a role in translation. Required during embryogenesis. In nucleus, might be involved in the regulation of its own gene expression (521 aa)
     
     
0.570
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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