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AT5G56570 AT5G56570 AT3G45460 AT3G45460 AT3G45480 AT3G45480 AT1G56030 AT1G56030 AT5G54320 AT5G54320 AT5G37870 AT5G37870 AT4G05230 AT4G05230 APRR4 APRR4 AT5G49260 AT5G49260 AT3G55540 AT3G55540 AT5G18330 AT5G18330
"AT1G56030" - RING/U-box superfamily protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G56030RING/U-box superfamily protein (371 aa)    
Predicted Functional Partners:
AT5G49260
Uncharacterized protein (210 aa)
     
        0.437
APRR4
Pseudo-response regulator 4; Transcriptional activator that binds specifically to the DNA sequence 5’-[AG]GATT-3’ (292 aa)
     
        0.437
AT5G54320
Uncharacterized protein (369 aa)
     
        0.436
AT4G05230
Ubiquitin family protein (206 aa)
     
        0.436
AT3G45480
RING/U-box protein with C6HC-type zinc finger (382 aa)
     
        0.436
AT5G37870
Protein with RING/U-box and TRAF-like domains; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates (By similarity) (281 aa)
     
        0.435
AT3G55540
Nuclear transport factor 2 family protein (334 aa)
     
        0.435
AT3G45460
IBR domain containing protein (389 aa)
     
        0.435
AT5G18330
ARM repeat superfamily protein; Functions as an E3 ubiquitin ligase (445 aa)
     
        0.431
AT5G56570
F-box/FBD/LRR-repeat protein (439 aa)
     
        0.429
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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