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STRINGSTRING
AT3G46650 AT3G46650 PDLP6 PDLP6 AT3G61560 AT3G61560 AT5G58090 AT5G58090 AT3G15480 AT3G15480 RTNLB3 RTNLB3 AT1G56145 AT1G56145 AT1G43245 AT1G43245 AT1G13640 AT1G13640 AT1G15190 AT1G15190 AT1G51310 AT1G51310
"AT1G56145" - Leucine-rich repeat transmembrane protein kinase in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G56145Leucine-rich repeat transmembrane protein kinase (1039 aa)    
Predicted Functional Partners:
AT1G51310
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (497 aa)
           
  0.773
AT3G61560
Reticulon family protein (264 aa)
           
  0.740
AT3G46650
UDP-glycosyltransferase-like protein (435 aa)
           
  0.740
AT5G58090
Glucan endo-1,3-beta-glucosidase 6 (477 aa)
           
  0.737
AT3G15480
Uncharacterized protein (175 aa)
           
  0.731
AT1G43245
SET domain-containing protein (558 aa)
           
  0.709
AT1G13640
Phosphatidylinositol 3-and 4-kinase-like protein; The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3) (622 aa)
           
  0.709
RTNLB3
Reticulan like protein B3 (271 aa)
           
  0.670
PDLP6
Plasmodesmata-located protein 6; Modulates cell-to-cell trafficking (288 aa)
           
  0.638
AT1G15190
Fasciclin-like arabinogalactan protein 19; May be a cell surface adhesion protein (248 aa)
           
  0.632
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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