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AT1G61700 AT1G61700 RGTA2 RGTA2 RGTB1 RGTB1 B70 B70 RGTB2 RGTB2 TPR5 TPR5 RIN1 RIN1 AT3G49830 AT3G49830 AT5G67630 AT5G67630 AT1G79190 AT1G79190 AT1G03760 AT1G03760
"TPR5" - Tetratricopeptide repeat 5 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TPR5Tetratricopeptide repeat 5 (494 aa)    
Predicted Functional Partners:
RGTA2
RAB geranylgeranyl transferase alpha subunit 2 (687 aa)
           
  0.959
AT1G79190
Uncharacterized protein (1335 aa)
     
 
  0.941
RGTB1
RAB geranylgeranyl transferase beta subunit 1 (321 aa)
     
   
  0.867
RIN1
RuvB-like protein 1; Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. Has single-stranded DNA- stimulated ATPase and ATP-dependent DNA helicase (3’ to 5’) activity suggesting a role in nuclear processes such as recombination and transcription (By similarity) (458 aa)
     
 
  0.792
RGTB2
RAB geranylgeranyl transferase beta subunit 2 (317 aa)
           
  0.738
AT1G61700
DNA-directed RNA polymerases II subunit L (71 aa)
           
  0.738
AT1G03760
Prefoldin chaperone subunit family protein (391 aa)
     
      0.705
AT5G67630
RuvB-like protein 2 (469 aa)
     
 
  0.693
AT3G49830
P-loop containing nucleoside triphosphate hydrolase-like protein (473 aa)
     
 
  0.693
B70
Transcription factor bHLH103 (301 aa)
           
  0.678
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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