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GGT3 GGT3 MAC3B MAC3B AT4G21110 AT4G21110 MAC3A MAC3A SKIP SKIP AT1G58050 AT1G58050 AT1G10580 AT1G10580 RPF3 RPF3 AT4G32700 AT4G32700 EIF4A-2 EIF4A-2 PEPKR1 PEPKR1
"AT1G58050" - RNA helicase family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G58050RNA helicase family protein (1417 aa)    
Predicted Functional Partners:
GGT3
Gamma-glutamyl transpeptidase 3 (191 aa)
           
  0.802
PEPKR1
Phosphoenolpyruvate carboxylase-related kinase 1 (522 aa)
           
  0.780
AT4G32700
DNA polymerase theta subunit; Required for regulated cell division and differentiation in meristems and embryos, thus modulating adaxial-abaxial polarity. Regulates the progression of cell cycle and DNA replication (e.g. G2/M progression and intrachromosomal recombination) and the expression of genes during development, especially genes nearby the Helitron transposons (2154 aa)
   
 
  0.740
AT1G10580
pre-mRNA-processing factor 17 (573 aa)
     
 
  0.732
MAC3B
MOS4-associated complex 3B; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity). Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity (525 aa)
     
 
  0.705
MAC3A
MOS4-associated complex 3A; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity). Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity (523 aa)
     
 
  0.705
RPF3
RNA processing factor 3 (629 aa)
     
   
  0.690
AT4G21110
G10 family protein (145 aa)
       
 
  0.690
EIF4A-2
Eif4a-2; ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5’-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity) (412 aa)
     
 
  0.681
SKIP
Chromatin protein family; Splicing factor involved in post-transcriptional regulation of circadian clock and flowering time genes. Associates with the pre-mRNA of PRR7, PRR9, ELF3 and GI, and is necessary for the regulation of their alternative splicing and mRNA maturation. Probably involved in splice site recognition (613 aa)
     
 
  0.679
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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