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AT5G08420 AT5G08420 AT3G08620 AT3G08620 AT5G51300 AT5G51300 AT1G09660 AT1G09660 AT3G26560 AT3G26560 U2A U2A RBP1 RBP1 AT5G11760 AT5G11760 PUR4 PUR4 AT3G07590 AT3G07590 AT3G03920 AT3G03920
"RBP1" - RNA-binding protein 1 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
RBP1RNA-binding protein 1; RNA binding protein. Can also bind in vitro to single- stranded DNA (360 aa)    
Predicted Functional Partners:
AT3G26560
ATP-dependent RNA helicase, putative; May be involved in pre-mRNA splicing (1168 aa)
     
 
  0.946
PUR4
Purine biosynthesis 4; Essential to the male gametophyte development. Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate (1407 aa)
     
      0.930
AT3G07590
Small nuclear ribonucleoprotein D1 (114 aa)
       
 
  0.834
AT3G03920
H/ACA ribonucleoprotein complex subunit 1; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs (By similarity) (202 aa)
     
 
  0.833
AT5G51300
Splicing factor 1 (804 aa)
     
 
  0.815
AT3G08620
RNA-binding KH domain-containing protein (283 aa)
     
 
  0.812
AT5G08420
RNA-binding KH domain-containing protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (391 aa)
     
 
  0.811
U2A
U2 small nuclear ribonucleoprotein A; This protein is associated with sn-RNP U2. It helps the A’ protein to bind stem loop IV of U2 snRNA (By similarity) (249 aa)
       
  0.808
AT1G09660
RNA-binding KH domain-containing protein (298 aa)
     
 
  0.807
AT5G11760
Uncharacterized protein (181 aa)
           
  0.807
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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