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CYTC-1 CYTC-1 CYTC-2 CYTC-2 AT5G38550 AT5G38550 CRK40 CRK40 AT1G58602 AT1G58602 AT5G11470 AT5G11470 EDM2 EDM2 AT3G26560 AT3G26560 AT3G05410 AT3G05410 AT1G11270 AT1G11270 AT3G15605 AT3G15605
"AT1G58602" - LRR and NB-ARC domain-containing disease resistance protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G58602LRR and NB-ARC domain-containing disease resistance protein; Potential disease resistance protein (1138 aa)    
Predicted Functional Partners:
AT1G11270
F-box and associated interaction domain-containing protein (312 aa)
           
  0.910
AT3G05410
Photosystem II reaction center PsbP family protein (280 aa)
           
  0.806
CRK40
Cysteine-rich receptor-like protein kinase 40 (654 aa)
   
  0.780
AT5G11470
Bromo-adjacent homology (BAH) domain-containing protein (757 aa)
           
  0.774
CYTC-2
Cytochrome c-2; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain (By similarity) (112 aa)
     
  0.745
CYTC-1
CYTOCHROME C-1; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain (By similarity) (114 aa)
     
  0.745
EDM2
ENHANCED DOWNY MILDEW 2; Cellular antisilencing factor and regulator of genome DNA methylation patterns involved in the regulation of chromatin states. Together with SUVH4, monitors repressive epigenetic marks H3K27me1, H3K9me2, and prevents DNA-methylation at CHG sites, affecting especially the expression of transposons and developmentally important genes (PubMed-21830950, PubMed-23609044, PubMed-24248388). Regulates alternative RNA processing such as distal 3’ polyadenylation by intronic heterochromatin (PubMed-24248388). Transcription factor that binds DNA and contributes to transcr [...] (1297 aa)
           
  0.739
AT3G15605
Nucleic acid binding (481 aa)
           
  0.737
AT5G38550
Jacalin lectin family protein (594 aa)
           
  0.703
AT3G26560
ATP-dependent RNA helicase, putative; May be involved in pre-mRNA splicing (1168 aa)
       
 
  0.689
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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