Full Link:
STRINGSTRING
RPOA RPOA NDHD NDHD RPOB RPOB MAKR6 MAKR6 ACCD ACCD CRR28 CRR28 VAR3 VAR3 AT4G14190 AT4G14190 AT3G20930 AT3G20930 AT1G70650 AT1G70650 AT1G55040 AT1G55040
"CRR28" - CHLORORESPIRATORY REDUCTION28 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRR28CHLORORESPIRATORY REDUCTION28; Involved in multiple sites RNA editing events in chloroplasts. Involved in the editing of the site 2 of ndhB (ndhB- 2) and site 3 of ndhD (ndhD-3) transcripts, which are two plastid- encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Required for the activity of the NDH complex of the photosynthetic electron transport chain (638 aa)    
Predicted Functional Partners:
NDHD
NADH-Ubiquinone/plastoquinone (complex I) protein.[Source-TAIR;Acc-ATCG01050] (506 aa)
           
  0.744
AT3G20930
RNA recognition motif-containing protein (374 aa)
     
 
  0.667
RPOB
RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1072 aa)
     
   
  0.658
VAR3
VARIEGATED 3; Probable component of some protein complex required for chloroplast and palisade cell development (758 aa)
       
 
  0.636
AT4G14190
Pentatricopeptide repeat-containing protein (501 aa)
           
  0.633
MAKR6
Uncharacterized protein; May be involved in abscisic acid signaling by acting as a kinase regulator (235 aa)
           
  0.631
RPOA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (329 aa)
           
  0.604
ACCD
acetyl-CoA carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA (488 aa)
           
  0.560
AT1G70650
Ran BP2/NZF zinc finger-like superfamily protein (595 aa)
           
  0.558
AT1G55040
Zinc finger (Ran-binding) family protein (849 aa)
           
  0.558
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (1%)