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AT1G60200 AT1G60200 AT5G51410 AT5G51410 DOT2 DOT2 AT5G17440 AT5G17440 AT3G49601 AT3G49601 U1-70K U1-70K AT2G43370 AT2G43370 PRP40A PRP40A PRP39 PRP39 PRP40B PRP40B AT2G41020 AT2G41020
"AT1G60200" - RNA-binding protein 25 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
AT1G60200RNA-binding protein 25 (899 aa)    
Predicted Functional Partners:
U1-70K
Encodes U1 snRNP 70K; Mediates the splicing of pre-mRNA by binding to the loop I region of U1-snRNA (427 aa)
     
 
  0.983
PRP40B
pre-mRNA-processing protein 40B; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. I [...] (992 aa)
     
 
  0.981
AT2G41020
WW domain-containing protein (463 aa)
     
 
  0.978
AT2G43370
RNA-binding (RRM/RBD/RNP motifs) family protein; May facilitate 5’ splice site recognition in the minor spliceosome. May be involved in interactions with components of the major spliceosome bound to the pyrimidine tract of an upstream U2-type intron (333 aa)
     
 
  0.978
PRP40A
pre-mRNA-processing protein 40A; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. I [...] (958 aa)
     
 
  0.976
DOT2
DEFECTIVELY ORGANIZED TRIBUTARIES 2; Plays a role in root, shoot and flower development. Probably required for normal root and shoot meristem organization and maintenance and the proper expression of PIN and PLT genes (PubMed-19000164). Involved in leaf vasculature patterning (PubMed-18643975) (820 aa)
     
 
  0.972
AT3G49601
Uncharacterized protein (591 aa)
     
 
  0.971
PRP39
pre-mRNA-processing factor 39 (823 aa)
     
 
  0.966
AT5G51410
LUC7 N_terminus domain-containing protein (334 aa)
     
 
  0.965
AT5G17440
LUC7 related protein (404 aa)
     
 
  0.958
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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