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AT5G26749 AT5G26749 MAC3A MAC3A SR30 SR30 SCL30 SCL30 AT5G28740 AT5G28740 MAC3B MAC3B AtRZ-1b AtRZ-1b AtRZ-1c AtRZ-1c AT3G26560 AT3G26560 AT2G17975 AT2G17975 PUR4 PUR4
AtRZ-1b in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AtRZ-1bAtRZ-1b; Binds RNA and DNA sequences non-specifically. May be involved in tolerance to cold stress (292 aa)    
Predicted Functional Partners:
AT3G26560
ATP-dependent RNA helicase, putative; May be involved in pre-mRNA splicing (1168 aa)
     
 
  0.946
PUR4
Purine biosynthesis 4; Essential to the male gametophyte development. Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate (1407 aa)
     
      0.930
AtRZ-1c
AtRZ-1c; Binds RNA and DNA sequences non-specifically. May be involved in tolerance to cold stress (310 aa)
   
 
0.918
SCL30
SC35-like splicing factor 30; Involved in intron recognition and spliceosome assembly (Probable). Probably active at the 5’ splice sites (262 aa)
   
      0.884
AT2G17975
Zinc finger (Ran-binding) family protein (268 aa)
     
 
  0.858
SR30
Splicing factor, arginine/serine-rich 1/9; Regulatory splicing factor that modulates alternative splicing and gene expression in specific cell types. Autoregulates its own expression. Probably involved in intron recognition and spliceosome assembly (268 aa)
       
      0.828
AT5G28740
pre-mRNA-splicing factor SYF1 (917 aa)
       
 
  0.783
MAC3B
MOS4-associated complex 3B; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity). Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity (525 aa)
     
 
  0.775
MAC3A
MOS4-associated complex 3A; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity). Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity (523 aa)
     
 
  0.775
AT5G26749
C2H2 and C2HC zinc fingers superfamily protein (166 aa)
       
  0.775
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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