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At5g43270 At5g43270 At4g24150 At4g24150 NF-YA8 NF-YA8 AT5G43740 AT5G43740 LCR19 LCR19 CHX18 CHX18 SCRL6 SCRL6 LCR64 LCR64 DMT2 DMT2 LCR65 LCR65 APS1 APS1
"SCRL6" - SCR-like 6 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCRL6SCR-like 6 (95 aa)    
Predicted Functional Partners:
AT5G43740
CC-NBS-LRR class disease resistance protein; Probable disease resistance protein (862 aa)
           
  0.735
At4g24150
Growth-regulating factor 8; Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (493 aa)
     
   
  0.684
CHX18
cation/H+ exchanger 18; May operate as a cation/H(+) antiporter (810 aa)
           
  0.670
At5g43270
Squamosa promoter binding protein-like 2; Trans-acting factor that binds specifically to the consensus nucleotide sequence 5’-TNCGTACAA-3’ (419 aa)
           
  0.559
DMT2
DNA methyltransferase 2; Maintains chromatin CpG methylation that plays a role in genomic imprinting, regulation of embryogenesis and seed viability. Required for proper patterns of CG DNA methylation in dividing cells (By similarity) (1545 aa)
           
  0.554
NF-YA8
Nuclear factor Y, subunit A8; Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (328 aa)
           
  0.551
APS1
ATP sulfurylase 1; Mediates selenate (Se) reduction, and promotes Se and sulfur (S) uptake and assimilation (463 aa)
           
  0.449
LCR64
Defensin-like protein 178 (90 aa)
     
        0.438
LCR19
Defensin-like protein 183 (126 aa)
     
        0.437
LCR65
Defensin-like protein 176 (87 aa)
     
        0.437
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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