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ELF8 ELF8 KTF1 KTF1 GTA2 GTA2 GTC2 GTC2 SPT16 SPT16 VIP4 VIP4 ELF7 ELF7 VIP5 VIP5 HMG HMG PHP PHP AT2G34210 AT2G34210
"VIP5" - Vernalization independence 5 in Arabidopsis thaliana
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second shell of interactors
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proteins of unknown 3D structure
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Predicted Interactions
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textmining
co-expression
protein homology
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VIP5Vernalization independence 5; Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 ’Lys-4’ (H3K4me3) (PubMed-20363855). Involved in regulation of flowering time. Required for the expression of the flowering repressors and FLC and MADS-box genes of the MAF family (PubMed-15472079). Involved in the control of seed dormancy and germination (PubMed-21799800) (643 aa)    
Predicted Functional Partners:
VIP4
Leo1-like family protein; Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 ’Lys-4’ (H3K4me3) (PubMed-20363855). Involved in regulation of flowering time. Required for the expression of the flowering repressor and MADS box gene FLC (PubMed-12207655). Involved in the control of seed dormancy and germination (PubMed-21799800) (625 aa)
     
  0.999
ELF7
EARLY FLOWERING 7; Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 ’Lys-4’ (H3K4me3) (PubMed-20363855). Involved in regulation of flowering time. Required for the expression of the flowering repressors and MAD-box genes FLC, AGL27/FLM and AGL31/MAF2. Required for histone H3 trimethylation on ’Lys-4’ H3K4me3 at the FLC and AGL27/FLM loci (PubMed-15520273). Involved in the control of seed dormancy and germination (PubMed-21799800) (589 aa)
     
  0.999
ELF8
EARLY FLOWERING 8; Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 ’Lys-4’ (H3K4me3) (PubMed-20363855). Involved in regulation of flowering time. Required for the expression of the MADS box genes and flowering repressors FLC, AGL27/FLM and AGL31/MAF2 (PubMed-15520273, PubMed-15472079). Required for histone H3 trimethylation on ’Lys-4’ H3K4me3 at the FLC and AGL27/FLM loci (PubMed-15520273). Involved in the control of seed dormancy and germination (PubMed-21799800) (1091 aa)
     
  0.999
PHP
PLANT HOMOLOGOUS TO PARAFIBROMIN; Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 ’Lys-4’ (H3K4me3) (PubMed-20363855). Involved in regulation of flowering time. Required for the expression of the flowering repressors FLC and MADS-box genes of the MAF family. Required for histone H3 trimethylation on ’Lys-4’ H3K4me3 at the FLC locus (PubMed-20363855, PubMed-20463090). Prevents trimethylation on ’Lys-27’ H3K276me3 at the same locus (PubMed-20363855) (415 aa)
     
  0.998
HMG
High mobility group; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the n [...] (646 aa)
     
  0.997
SPT16
FACT complex subunit SPT16; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (1074 aa)
     
  0.997
GTC2
Protein GTC2 (343 aa)
     
  0.996
GTA2
Global transcription factor group A2; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity) (1041 aa)
     
  0.996
KTF1
Kow domain-containing transcription factor 1; Effector of RNA-directed DNA methylation (RdDM) triggered by small interfering RNAs (siRNAs, 24-nt RNAs). Functions as an adapter protein that binds scaffold transcripts generated by polymerase V and recruits AGO4 and AGO4-bound siRNAs to form an RdDM effector complex (PubMed-19410546, PubMed-19343051). Promotes the expression of 24-nt RNAs (PubMed-19343051). Required for the initial establishment of DNA methylation (PubMed-21150311). Together with AGO4, required for transcriptional gene silencing (TGS) by DNA methylation and repressive his [...] (1493 aa)
     
  0.995
AT2G34210
Transcription elongation factor Spt5; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity) (989 aa)
     
  0.995
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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