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AT1G70820 AT1G70820 RLK1 RLK1 At3g62690 At3g62690 AL1 AL1 AT2G47560 AT2G47560 AT1G73480 AT1G73480 SIZ1 SIZ1 EDA16 EDA16 XRCC3 XRCC3 THO2 THO2 AT2G40935 AT2G40935
"EDA16" - Embryo sac development arrest 16 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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Textmining
[Homology]
Score
EDA16Embryo sac development arrest 16 (1280 aa)    
Predicted Functional Partners:
AT2G40935
PLAC8 family protein; May be involved in cadmium resistance (190 aa)
           
  0.922
At3g62690
AtL5 (257 aa)
           
  0.862
RLK1
Receptor-like protein kinase 1 (748 aa)
           
  0.745
AT2G47560
RING-H2 finger protein ATL64 (227 aa)
           
  0.739
AT1G73480
alpha/beta-Hydrolases superfamily protein (463 aa)
           
  0.739
AL1
Alfin-like 1; Histone-binding component that specifically recognizes H3 tails trimethylated on ’Lys-4’ (H3K4me3), which mark transcription start sites of virtually all active genes (241 aa)
           
  0.670
XRCC3
DNA repair protein XRCC3-like protein; Plays essential roles in DNA damage repair in both somatic and meiotic cells. It is important for postsynaptic events following pachytene in meiosis. It is also required for DNA cross- links repair and is involved in double strand breaks (DSBs) repair (304 aa)
       
 
  0.550
THO2
THO complex subunit 2; Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export (1823 aa)
     
      0.542
SIZ1
E3 SUMO-protein ligase SIZ1; E3 SUMO protein ligase involved in regulation processes. Mediates SUMO/ attachment to PHR1, a MYB transcriptional activator controlling the phosphate deficiency responses. Functions as an upstream negative regulator of salicylic acid (SA) accumulation and subsequent SA-mediated systemic acquired resistance (SAR) signaling. Probably not involved in jasmonic acid (JA)-mediated defense response. Participates in abiotic stress-induced sumoylation. Controls heat shock-induced SUMO1 and SUMO2 conjugation and facilitates basal thermotolerance. Involved in freezing [...] (885 aa)
     
 
  0.530
AT1G70820
Phosphoglucomutase-like protein (615 aa)
           
  0.502
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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