Full Link:
STRINGSTRING
GDU1 GDU1 AT5G60350 AT5G60350 BGLU32 BGLU32 AT1G61270 AT1G61270 GLT1 GLT1 AT5G51000 AT5G51000 AT5G64870 AT5G64870 BGLU31 BGLU31 PAPS1 PAPS1 LOG6 LOG6 AT5G24040 AT5G24040
"AT1G61270" - Lysine histidine transporter-like 3 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G61270Lysine histidine transporter-like 3; Amino acid transporter (451 aa)    
Predicted Functional Partners:
GLT1
Glutamate synthase 1 [NADH]; Involved in glutamate biosynthesis. Required for non- photorespiratory ammonium assimilation. Probably involved in primary ammonium assimilation in roots (2208 aa)
     
   
  0.488
GDU1
Glutamine dumper 1; Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. Required the interaction with the RING-type E3 ubiquitin-protein ligase LOG2 to fulfill its function. Plays a role in the Gln export at hydathodes, at xylem parenchyma into xylem sap and from mesophyll into leaf apoplasm. Acts upstream genes involved in the salicylic acid (SA) pathway and in the geminivirus-host interaction (158 aa)
           
  0.475
PAPS1
poly(A) polymerase 1; Essential protein (PubMed-19956626). Polymerase that creates the 3’-poly(A) tail of mRNA’s (PubMed-15297145). Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus (By similarity) (713 aa)
     
        0.468
AT5G64870
Flotillin-like protein 3; May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles (479 aa)
     
      0.462
BGLU31
Beta glucosidase 31 (534 aa)
     
        0.457
LOG6
LONELY GUY 6 (229 aa)
     
   
  0.437
AT5G60350
Uncharacterized protein (291 aa)
     
        0.436
AT5G51000
Putative F-box protein (378 aa)
     
        0.436
BGLU32
Beta glucosidase 32 (534 aa)
     
        0.436
AT5G24040
Uncharacterized protein (373 aa)
     
        0.436
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (1%)