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PPD2 PPD2 AT2G17036 AT2G17036 AT5G51150 AT5G51150 AT1G61970 AT1G61970 AT3G57170 AT3G57170 AT5G03830 AT5G03830 AT4G36050 AT4G36050 INO80 INO80 EMB3103 EMB3103 DG1 DG1 AT2G42920 AT2G42920
"AT1G61970" - Mitochondrial transcription termination factor family protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G61970Mitochondrial transcription termination factor family protein (418 aa)    
Predicted Functional Partners:
AT2G42920
Pentatricopeptide repeat-containing protein (559 aa)
     
      0.478
DG1
DELAYED GREENING 1; Involved in the regulation of early chloroplast development and chloroplast gene expression in a SIGF-dependent manner (798 aa)
     
      0.475
EMB3103
EMBRYO DEFECTIVE 3103 (664 aa)
     
      0.450
AT4G36050
Endonuclease 2; Exhibits apurinic/apyrimidinic (AP) endonuclease activity in vitro (PubMed-25569774). By contrast, another report show that APE2 has no biochemical activity (PubMed-25228464). Unable to catalyze the conversion of 3’-phosphor-alpha,beta- unsaturated aldehyde (3’-PUA) to 3’-OH (PubMed-25228464, PubMed-25569774). Has no in vitro 3’-phosphatase activity (PubMed-25228464, PubMed-25569774). Redundant with APE1L and at least one functional allele is required for seed viability (PubMed-19172180). Has a strong non-specific affinity to DNA (PubMed-25228464) (610 aa)
     
        0.438
AT5G51150
Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (531 aa)
     
        0.435
INO80
INO80 ortholog; DNA helicase and probable main scaffold component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair. Positive regulator of homologous recombination, but not an essential component of homologous recombination. Not involved in the illegitimate repair pathway (1540 aa)
     
        0.435
AT2G17036
F-box-like protein (428 aa)
     
        0.435
AT5G03830
CDK inhibitor P21 binding protein (278 aa)
     
        0.431
AT3G57170
N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (560 aa)
     
        0.422
PPD2
Protein TIFY 4B; Regulates the arrest of dispersed meristematic cells during lamina development (315 aa)
     
        0.415
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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