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EIF4A-2 EIF4A-2 AT2G37990 AT2G37990 AT5G59450 AT5G59450 AT1G10740 AT1G10740 AT5G66631 AT5G66631 AT5G59460 AT5G59460 AT1G62310 AT1G62310 AT1G76140 AT1G76140 MGH3 MGH3 PUR2 PUR2 AT1G31220 AT1G31220
"AT1G62310" - Transcription factor jumonji domain-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G62310Transcription factor jumonji domain-containing protein (883 aa)    
Predicted Functional Partners:
MGH3
Histone H3; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (By similarity) (137 aa)
       
    0.900
AT2G37990
Ribosome biogenesis regulatory protein-like protein; Involved in ribosome biogenesis (318 aa)
           
  0.803
AT1G10740
alpha/beta-Hydrolases superfamily protein (473 aa)
           
  0.779
AT5G59460
M-phase phosphoprotein 6, animal type (172 aa)
           
  0.731
AT5G59450
Scarecrow-like protein 11; Probable transcription factor involved in plant development (610 aa)
           
  0.670
AT1G76140
Prolyl oligopeptidase-like protein (795 aa)
           
  0.604
AT5G66631
Pentatricopeptide repeat-containing protein (661 aa)
           
  0.502
EIF4A-2
Eif4a-2; ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5’-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity) (412 aa)
           
  0.473
AT1G31220
Phosphoribosylglycinamide formyltransferase (292 aa)
       
      0.457
PUR2
Purine biosynthesis 2 (532 aa)
       
      0.457
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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