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RRP41 RRP41 At5g35590 At5g35590 AT3G56330 AT3G56330 AT1G15840 AT1G15840 NF-YC9 NF-YC9 AT3G01560 AT3G01560 AT1G62760 AT1G62760 AT5G57210 AT5G57210 CHY1 CHY1 NEK6 NEK6 ALDH2B4 ALDH2B4
"AT1G62760" - Plant invertase/pectin methylesterase inhibitor superfamily protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G62760Plant invertase/pectin methylesterase inhibitor superfamily protein (312 aa)    
Predicted Functional Partners:
AT5G57210
Microtubule-associated protein-related protein (737 aa)
           
  0.866
AT3G01560
Uncharacterized protein (511 aa)
           
  0.866
AT3G56330
N2,N2-dimethylguanosine tRNA methyltransferase (433 aa)
           
  0.841
AT1G15840
Uncharacterized protein (126 aa)
           
  0.808
At5g35590
Proteasome alpha subunit A1; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (246 aa)
           
  0.670
NEK6
Serine/threonine-protein kinase Nek5; Involved in epidermal-cell morphogenesis in hypocotyls and roots. May act on the microtubule function. May have a secondary role in trichome branching (956 aa)
           
  0.631
CHY1
3-hydroxyisobutyryl-CoA hydrolase 1; Involved in valine catabolism. May be indirectly involved in benzoic acid biosynthesis and in cold signaling and cold tolerance (378 aa)
           
  0.559
NF-YC9
Nuclear factor Y, subunit C9; Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (231 aa)
           
  0.559
RRP41
Exonuclease RRP41 (RRP41); Non-catalytic component of the RNA exosome complex which has 3’->5’ exoribonuclease activity and participates in a multitude of cellular RNA processing, maturation and degradation events. In vitro, is a processive phosphorolytic exonuclease and requires a single-stranded poly(A) tail on the substrate RNA for its activity. Can complement the growth defect of a yeast mutant lacking RRP41 exonuclease (PubMed-10930416). Required for normal development of female gametophytes (PubMed-18160042) (241 aa)
           
  0.556
ALDH2B4
Aldehyde dehydrogenase 2B4; Possesses activity on acetaldehyde and glycolaldehyde in vitro (538 aa)
           
  0.556
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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