Full Link:
STRINGSTRING
AT1G48510 AT1G48510 FHY3 FHY3 AT1G62914 AT1G62914 COX15 COX15 AT1G02410 AT1G02410 SDG25 SDG25 SURF1 SURF1
"AT1G62914" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G62914Pentatricopeptide repeat-containing protein (528 aa)    
Predicted Functional Partners:
SURF1
SURFEIT 1; Probably involved in the biogenesis of the COX complex (354 aa)
     
   
  0.449
AT1G48510
Surfeit locus 1 cytochrome c oxidase biogenesis protein; May be involved in the biogenesis of the COX complex (384 aa)
     
   
  0.449
SDG25
SET domain protein 25; Histone methyltransferase involved in regulation of flowering time. Required for the expression of the flowering repressors FLC and MADS-box genes of the MAF family (PubMed-19726574, PubMed-19855050). Required for histone H3 dimethylation on ’Lys-36’ H3K36me2 at the FLC locus (PubMed-19726574). Required for histone H3 trimethylation on ’Lys- 4’ H3K4me3 at the FLC locus. Prevents trimethylation on ’Lys-27’ H3K276me3 at the same locus (PubMed-19855050). Involved in the control of seed dormancy and germination (PubMed-21799800) (1423 aa)
     
        0.436
AT1G02410
Cytochrome c oxidase assembly protein CtaG / Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I (287 aa)
       
 
  0.433
FHY3
Far-red elongated hypocotyls 3; Transcription activator that recognizes and binds to the DNA consensus sequence 5’-CACGCGC-3’. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression (839 aa)
     
        0.416
COX15
Cytochrome c oxidase 15; May be involved in the biosynthesis of heme A (457 aa)
     
   
  0.404
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (2%)