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PUM16 PUM16 RTFL5 RTFL5 AT5G01990 AT5G01990 AT3G51280 AT3G51280 GH9B6 GH9B6 AT1G63100 AT1G63100 AT3G49450 AT3G49450 At1g03780 At1g03780 PUM15 PUM15 TOPII TOPII PUM17 PUM17
"AT1G63100" - Scarecrow-like protein 28 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G63100Scarecrow-like protein 28; Probable transcription factor involved in plant development (658 aa)    
Predicted Functional Partners:
AT3G51280
Tetratricopeptide repeat domain-containing protein; Probably involved in the regulation of cell division (430 aa)
     
        0.631
TOPII
Topoisomerase II; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1473 aa)
     
        0.618
RTFL5
ROTUNDIFOLIA like 5 (144 aa)
           
  0.603
PUM16
Pumilio 16; Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3’-UTR of target mRNAs (332 aa)
           
  0.603
AT3G49450
F-box protein (397 aa)
           
  0.603
PUM17
Pumilio 17 (304 aa)
           
  0.603
GH9B6
Endoglucanase 4 (489 aa)
           
  0.603
AT5G01990
Auxin efflux carrier family protein (431 aa)
           
  0.601
PUM15
Pumilio 15; Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3’-UTR of target mRNAs (477 aa)
           
  0.601
At1g03780
Targeting protein for XKLP2; Regulates prospindle assembly during late prophase and at the onset of mitosis, before nuclear envelope breakdown (NEB). Is exported from the nucleus shortly before NEB and organized into two polar crescents. After NEB, is progressively associated with the forming spindle. Probably mediates AUR1 activation and localization to spindle microtubules. Has a microtubule binding capability and is able to trigger microtubule assembly induced by RanGTP in a heterologous system. Not involved in phragmoplast assembly, nuclear envelope reformation, and cortical microt [...] (790 aa)
     
        0.582
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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